MCMCTREE (paml version 4.10.7, June 2023) dummy.txt *** Locus 1 *** 72 2 ailuropoda_melanoleuca AA aotus_nancymaae AA bos_taurus AA callithrix_jacchus AA canis_familiaris AA capra_hircus AA carlito_syrichta AA cavia_aperea AA cavia_porcellus AA cebus_capucinus AA cercocebus_atys AA chinchilla_lanigera AA chlorocebus_sabaeus AA choloepus_hoffmanni AA colobus_angolensis_palliatus AA cricetulus_griseus_chok1gshd AA dasypus_novemcinctus AA dipodomys_ordii AA echinops_telfairi AA equus_caballus AA erinaceus_europaeus AA felis_catus AA fukomys_damarensis AA gorilla_gorilla AA heterocephalus_glaber_female AA homo_sapiens AA ictidomys_tridecemlineatus AA jaculus_jaculus AA loxodonta_africana AA macaca_fascicularis AA macaca_mulatta AA macaca_nemestrina AA mandrillus_leucophaeus AA mesocricetus_auratus AA microcebus_murinus AA microtus_ochrogaster AA monodelphis_domestica AA mus_caroli AA mus_musculus AA mus_pahari AA mus_spretus AA mustela_putorius_furo AA myotis_lucifugus AA nannospalax_galili AA nomascus_leucogenys AA notamacropus_eugenii AA ochotona_princeps AA octodon_degus AA ornithorhynchus_anatinus AA oryctolagus_cuniculus AA otolemur_garnettii AA ovis_aries AA pan_paniscus AA pan_troglodytes AA panthera_pardus AA panthera_tigris_altaica AA papio_anubis AA peromyscus_maniculatus_bairdii AA pongo_abelii AA procavia_capensis AA propithecus_coquereli AA pteropus_vampyrus AA rattus_norvegicus AA rhinopithecus_bieti AA rhinopithecus_roxellana AA saimiri_boliviensis_boliviensis AA sarcophilus_harrisii AA sorex_araneus AA sus_scrofa AA tupaia_belangeri AA tursiops_truncatus AA vicugna_pacos AA Printing out site pattern counts 72 1 P ailuropoda_melanoleuca A aotus_nancymaae A bos_taurus A callithrix_jacchus A canis_familiaris A capra_hircus A carlito_syrichta A cavia_aperea A cavia_porcellus A cebus_capucinus A cercocebus_atys A chinchilla_lanigera A chlorocebus_sabaeus A choloepus_hoffmanni A colobus_angolensis_palliatus A cricetulus_griseus_chok1gshd A dasypus_novemcinctus A dipodomys_ordii A echinops_telfairi A equus_caballus A erinaceus_europaeus A felis_catus A fukomys_damarensis A gorilla_gorilla A heterocephalus_glaber_female A homo_sapiens A ictidomys_tridecemlineatus A jaculus_jaculus A loxodonta_africana A macaca_fascicularis A macaca_mulatta A macaca_nemestrina A mandrillus_leucophaeus A mesocricetus_auratus A microcebus_murinus A microtus_ochrogaster A monodelphis_domestica A mus_caroli A mus_musculus A mus_pahari A mus_spretus A mustela_putorius_furo A myotis_lucifugus A nannospalax_galili A nomascus_leucogenys A notamacropus_eugenii A ochotona_princeps A octodon_degus A ornithorhynchus_anatinus A oryctolagus_cuniculus A otolemur_garnettii A ovis_aries A pan_paniscus A pan_troglodytes A panthera_pardus A panthera_tigris_altaica A papio_anubis A peromyscus_maniculatus_bairdii A pongo_abelii A procavia_capensis A propithecus_coquereli A pteropus_vampyrus A rattus_norvegicus A rhinopithecus_bieti A rhinopithecus_roxellana A saimiri_boliviensis_boliviensis A sarcophilus_harrisii A sorex_araneus A sus_scrofa A tupaia_belangeri A tursiops_truncatus A vicugna_pacos A 2 Frequencies.. T C A G ailuropoda_melanoleuca 0.00000 0.00000 1.00000 0.00000 GC = 0.000 aotus_nancymaae 0.00000 0.00000 1.00000 0.00000 GC = 0.000 bos_taurus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 callithrix_jacchus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 canis_familiaris 0.00000 0.00000 1.00000 0.00000 GC = 0.000 capra_hircus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 carlito_syrichta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_aperea 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_porcellus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cebus_capucinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cercocebus_atys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chinchilla_lanigera 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chlorocebus_sabaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 choloepus_hoffmanni 0.00000 0.00000 1.00000 0.00000 GC = 0.000 colobus_angolensis_palliatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cricetulus_griseus_chok1gshd 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dasypus_novemcinctus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dipodomys_ordii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 echinops_telfairi 0.00000 0.00000 1.00000 0.00000 GC = 0.000 equus_caballus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 erinaceus_europaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 felis_catus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 fukomys_damarensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 gorilla_gorilla 0.00000 0.00000 1.00000 0.00000 GC = 0.000 heterocephalus_glaber_female 0.00000 0.00000 1.00000 0.00000 GC = 0.000 homo_sapiens 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ictidomys_tridecemlineatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 jaculus_jaculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 loxodonta_africana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_fascicularis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_mulatta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_nemestrina 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mandrillus_leucophaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mesocricetus_auratus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microcebus_murinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microtus_ochrogaster 0.00000 0.00000 1.00000 0.00000 GC = 0.000 monodelphis_domestica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_caroli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_musculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_pahari 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_spretus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mustela_putorius_furo 0.00000 0.00000 1.00000 0.00000 GC = 0.000 myotis_lucifugus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nannospalax_galili 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nomascus_leucogenys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 notamacropus_eugenii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ochotona_princeps 0.00000 0.00000 1.00000 0.00000 GC = 0.000 octodon_degus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ornithorhynchus_anatinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 oryctolagus_cuniculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 otolemur_garnettii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ovis_aries 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_paniscus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_troglodytes 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_pardus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_tigris_altaica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 papio_anubis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 peromyscus_maniculatus_bairdii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pongo_abelii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 procavia_capensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 propithecus_coquereli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pteropus_vampyrus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rattus_norvegicus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_bieti 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_roxellana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 saimiri_boliviensis_boliviensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sarcophilus_harrisii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sorex_araneus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sus_scrofa 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tupaia_belangeri 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tursiops_truncatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 vicugna_pacos 0.00000 0.00000 1.00000 0.00000 GC = 0.000 Homogeneity statistic: X2 = 0.00000 G = 0.00000 Average 0.00000 0.00000 1.00000 0.00000 # constant sites: 2 (100.00%) *** Locus 2 *** 72 2 ailuropoda_melanoleuca AA aotus_nancymaae AA bos_taurus AA callithrix_jacchus AA canis_familiaris AA capra_hircus AA carlito_syrichta AA cavia_aperea AA cavia_porcellus AA cebus_capucinus AA cercocebus_atys AA chinchilla_lanigera AA chlorocebus_sabaeus AA choloepus_hoffmanni AA colobus_angolensis_palliatus AA cricetulus_griseus_chok1gshd AA dasypus_novemcinctus AA dipodomys_ordii AA echinops_telfairi AA equus_caballus AA erinaceus_europaeus AA felis_catus AA fukomys_damarensis AA gorilla_gorilla AA heterocephalus_glaber_female AA homo_sapiens AA ictidomys_tridecemlineatus AA jaculus_jaculus AA loxodonta_africana AA macaca_fascicularis AA macaca_mulatta AA macaca_nemestrina AA mandrillus_leucophaeus AA mesocricetus_auratus AA microcebus_murinus AA microtus_ochrogaster AA monodelphis_domestica AA mus_caroli AA mus_musculus AA mus_pahari AA mus_spretus AA mustela_putorius_furo AA myotis_lucifugus AA nannospalax_galili AA nomascus_leucogenys AA notamacropus_eugenii AA ochotona_princeps AA octodon_degus AA ornithorhynchus_anatinus AA oryctolagus_cuniculus AA otolemur_garnettii AA ovis_aries AA pan_paniscus AA pan_troglodytes AA panthera_pardus AA panthera_tigris_altaica AA papio_anubis AA peromyscus_maniculatus_bairdii AA pongo_abelii AA procavia_capensis AA propithecus_coquereli AA pteropus_vampyrus AA rattus_norvegicus AA rhinopithecus_bieti AA rhinopithecus_roxellana AA saimiri_boliviensis_boliviensis AA sarcophilus_harrisii AA sorex_araneus AA sus_scrofa AA tupaia_belangeri AA tursiops_truncatus AA vicugna_pacos AA Printing out site pattern counts 72 1 P ailuropoda_melanoleuca A aotus_nancymaae A bos_taurus A callithrix_jacchus A canis_familiaris A capra_hircus A carlito_syrichta A cavia_aperea A cavia_porcellus A cebus_capucinus A cercocebus_atys A chinchilla_lanigera A chlorocebus_sabaeus A choloepus_hoffmanni A colobus_angolensis_palliatus A cricetulus_griseus_chok1gshd A dasypus_novemcinctus A dipodomys_ordii A echinops_telfairi A equus_caballus A erinaceus_europaeus A felis_catus A fukomys_damarensis A gorilla_gorilla A heterocephalus_glaber_female A homo_sapiens A ictidomys_tridecemlineatus A jaculus_jaculus A loxodonta_africana A macaca_fascicularis A macaca_mulatta A macaca_nemestrina A mandrillus_leucophaeus A mesocricetus_auratus A microcebus_murinus A microtus_ochrogaster A monodelphis_domestica A mus_caroli A mus_musculus A mus_pahari A mus_spretus A mustela_putorius_furo A myotis_lucifugus A nannospalax_galili A nomascus_leucogenys A notamacropus_eugenii A ochotona_princeps A octodon_degus A ornithorhynchus_anatinus A oryctolagus_cuniculus A otolemur_garnettii A ovis_aries A pan_paniscus A pan_troglodytes A panthera_pardus A panthera_tigris_altaica A papio_anubis A peromyscus_maniculatus_bairdii A pongo_abelii A procavia_capensis A propithecus_coquereli A pteropus_vampyrus A rattus_norvegicus A rhinopithecus_bieti A rhinopithecus_roxellana A saimiri_boliviensis_boliviensis A sarcophilus_harrisii A sorex_araneus A sus_scrofa A tupaia_belangeri A tursiops_truncatus A vicugna_pacos A 2 Frequencies.. T C A G ailuropoda_melanoleuca 0.00000 0.00000 1.00000 0.00000 GC = 0.000 aotus_nancymaae 0.00000 0.00000 1.00000 0.00000 GC = 0.000 bos_taurus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 callithrix_jacchus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 canis_familiaris 0.00000 0.00000 1.00000 0.00000 GC = 0.000 capra_hircus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 carlito_syrichta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_aperea 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_porcellus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cebus_capucinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cercocebus_atys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chinchilla_lanigera 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chlorocebus_sabaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 choloepus_hoffmanni 0.00000 0.00000 1.00000 0.00000 GC = 0.000 colobus_angolensis_palliatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cricetulus_griseus_chok1gshd 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dasypus_novemcinctus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dipodomys_ordii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 echinops_telfairi 0.00000 0.00000 1.00000 0.00000 GC = 0.000 equus_caballus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 erinaceus_europaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 felis_catus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 fukomys_damarensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 gorilla_gorilla 0.00000 0.00000 1.00000 0.00000 GC = 0.000 heterocephalus_glaber_female 0.00000 0.00000 1.00000 0.00000 GC = 0.000 homo_sapiens 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ictidomys_tridecemlineatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 jaculus_jaculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 loxodonta_africana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_fascicularis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_mulatta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_nemestrina 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mandrillus_leucophaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mesocricetus_auratus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microcebus_murinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microtus_ochrogaster 0.00000 0.00000 1.00000 0.00000 GC = 0.000 monodelphis_domestica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_caroli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_musculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_pahari 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_spretus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mustela_putorius_furo 0.00000 0.00000 1.00000 0.00000 GC = 0.000 myotis_lucifugus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nannospalax_galili 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nomascus_leucogenys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 notamacropus_eugenii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ochotona_princeps 0.00000 0.00000 1.00000 0.00000 GC = 0.000 octodon_degus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ornithorhynchus_anatinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 oryctolagus_cuniculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 otolemur_garnettii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ovis_aries 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_paniscus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_troglodytes 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_pardus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_tigris_altaica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 papio_anubis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 peromyscus_maniculatus_bairdii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pongo_abelii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 procavia_capensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 propithecus_coquereli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pteropus_vampyrus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rattus_norvegicus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_bieti 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_roxellana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 saimiri_boliviensis_boliviensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sarcophilus_harrisii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sorex_araneus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sus_scrofa 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tupaia_belangeri 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tursiops_truncatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 vicugna_pacos 0.00000 0.00000 1.00000 0.00000 GC = 0.000 Homogeneity statistic: X2 = 0.00000 G = 0.00000 Average 0.00000 0.00000 1.00000 0.00000 # constant sites: 2 (100.00%) *** Locus 3 *** 72 2 ailuropoda_melanoleuca AA aotus_nancymaae AA bos_taurus AA callithrix_jacchus AA canis_familiaris AA capra_hircus AA carlito_syrichta AA cavia_aperea AA cavia_porcellus AA cebus_capucinus AA cercocebus_atys AA chinchilla_lanigera AA chlorocebus_sabaeus AA choloepus_hoffmanni AA colobus_angolensis_palliatus AA cricetulus_griseus_chok1gshd AA dasypus_novemcinctus AA dipodomys_ordii AA echinops_telfairi AA equus_caballus AA erinaceus_europaeus AA felis_catus AA fukomys_damarensis AA gorilla_gorilla AA heterocephalus_glaber_female AA homo_sapiens AA ictidomys_tridecemlineatus AA jaculus_jaculus AA loxodonta_africana AA macaca_fascicularis AA macaca_mulatta AA macaca_nemestrina AA mandrillus_leucophaeus AA mesocricetus_auratus AA microcebus_murinus AA microtus_ochrogaster AA monodelphis_domestica AA mus_caroli AA mus_musculus AA mus_pahari AA mus_spretus AA mustela_putorius_furo AA myotis_lucifugus AA nannospalax_galili AA nomascus_leucogenys AA notamacropus_eugenii AA ochotona_princeps AA octodon_degus AA ornithorhynchus_anatinus AA oryctolagus_cuniculus AA otolemur_garnettii AA ovis_aries AA pan_paniscus AA pan_troglodytes AA panthera_pardus AA panthera_tigris_altaica AA papio_anubis AA peromyscus_maniculatus_bairdii AA pongo_abelii AA procavia_capensis AA propithecus_coquereli AA pteropus_vampyrus AA rattus_norvegicus AA rhinopithecus_bieti AA rhinopithecus_roxellana AA saimiri_boliviensis_boliviensis AA sarcophilus_harrisii AA sorex_araneus AA sus_scrofa AA tupaia_belangeri AA tursiops_truncatus AA vicugna_pacos AA Printing out site pattern counts 72 1 P ailuropoda_melanoleuca A aotus_nancymaae A bos_taurus A callithrix_jacchus A canis_familiaris A capra_hircus A carlito_syrichta A cavia_aperea A cavia_porcellus A cebus_capucinus A cercocebus_atys A chinchilla_lanigera A chlorocebus_sabaeus A choloepus_hoffmanni A colobus_angolensis_palliatus A cricetulus_griseus_chok1gshd A dasypus_novemcinctus A dipodomys_ordii A echinops_telfairi A equus_caballus A erinaceus_europaeus A felis_catus A fukomys_damarensis A gorilla_gorilla A heterocephalus_glaber_female A homo_sapiens A ictidomys_tridecemlineatus A jaculus_jaculus A loxodonta_africana A macaca_fascicularis A macaca_mulatta A macaca_nemestrina A mandrillus_leucophaeus A mesocricetus_auratus A microcebus_murinus A microtus_ochrogaster A monodelphis_domestica A mus_caroli A mus_musculus A mus_pahari A mus_spretus A mustela_putorius_furo A myotis_lucifugus A nannospalax_galili A nomascus_leucogenys A notamacropus_eugenii A ochotona_princeps A octodon_degus A ornithorhynchus_anatinus A oryctolagus_cuniculus A otolemur_garnettii A ovis_aries A pan_paniscus A pan_troglodytes A panthera_pardus A panthera_tigris_altaica A papio_anubis A peromyscus_maniculatus_bairdii A pongo_abelii A procavia_capensis A propithecus_coquereli A pteropus_vampyrus A rattus_norvegicus A rhinopithecus_bieti A rhinopithecus_roxellana A saimiri_boliviensis_boliviensis A sarcophilus_harrisii A sorex_araneus A sus_scrofa A tupaia_belangeri A tursiops_truncatus A vicugna_pacos A 2 Frequencies.. T C A G ailuropoda_melanoleuca 0.00000 0.00000 1.00000 0.00000 GC = 0.000 aotus_nancymaae 0.00000 0.00000 1.00000 0.00000 GC = 0.000 bos_taurus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 callithrix_jacchus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 canis_familiaris 0.00000 0.00000 1.00000 0.00000 GC = 0.000 capra_hircus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 carlito_syrichta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_aperea 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_porcellus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cebus_capucinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cercocebus_atys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chinchilla_lanigera 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chlorocebus_sabaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 choloepus_hoffmanni 0.00000 0.00000 1.00000 0.00000 GC = 0.000 colobus_angolensis_palliatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cricetulus_griseus_chok1gshd 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dasypus_novemcinctus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dipodomys_ordii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 echinops_telfairi 0.00000 0.00000 1.00000 0.00000 GC = 0.000 equus_caballus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 erinaceus_europaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 felis_catus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 fukomys_damarensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 gorilla_gorilla 0.00000 0.00000 1.00000 0.00000 GC = 0.000 heterocephalus_glaber_female 0.00000 0.00000 1.00000 0.00000 GC = 0.000 homo_sapiens 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ictidomys_tridecemlineatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 jaculus_jaculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 loxodonta_africana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_fascicularis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_mulatta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_nemestrina 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mandrillus_leucophaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mesocricetus_auratus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microcebus_murinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microtus_ochrogaster 0.00000 0.00000 1.00000 0.00000 GC = 0.000 monodelphis_domestica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_caroli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_musculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_pahari 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_spretus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mustela_putorius_furo 0.00000 0.00000 1.00000 0.00000 GC = 0.000 myotis_lucifugus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nannospalax_galili 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nomascus_leucogenys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 notamacropus_eugenii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ochotona_princeps 0.00000 0.00000 1.00000 0.00000 GC = 0.000 octodon_degus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ornithorhynchus_anatinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 oryctolagus_cuniculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 otolemur_garnettii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ovis_aries 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_paniscus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_troglodytes 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_pardus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_tigris_altaica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 papio_anubis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 peromyscus_maniculatus_bairdii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pongo_abelii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 procavia_capensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 propithecus_coquereli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pteropus_vampyrus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rattus_norvegicus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_bieti 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_roxellana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 saimiri_boliviensis_boliviensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sarcophilus_harrisii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sorex_araneus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sus_scrofa 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tupaia_belangeri 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tursiops_truncatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 vicugna_pacos 0.00000 0.00000 1.00000 0.00000 GC = 0.000 Homogeneity statistic: X2 = 0.00000 G = 0.00000 Average 0.00000 0.00000 1.00000 0.00000 # constant sites: 2 (100.00%) *** Locus 4 *** 72 2 ailuropoda_melanoleuca AA aotus_nancymaae AA bos_taurus AA callithrix_jacchus AA canis_familiaris AA capra_hircus AA carlito_syrichta AA cavia_aperea AA cavia_porcellus AA cebus_capucinus AA cercocebus_atys AA chinchilla_lanigera AA chlorocebus_sabaeus AA choloepus_hoffmanni AA colobus_angolensis_palliatus AA cricetulus_griseus_chok1gshd AA dasypus_novemcinctus AA dipodomys_ordii AA echinops_telfairi AA equus_caballus AA erinaceus_europaeus AA felis_catus AA fukomys_damarensis AA gorilla_gorilla AA heterocephalus_glaber_female AA homo_sapiens AA ictidomys_tridecemlineatus AA jaculus_jaculus AA loxodonta_africana AA macaca_fascicularis AA macaca_mulatta AA macaca_nemestrina AA mandrillus_leucophaeus AA mesocricetus_auratus AA microcebus_murinus AA microtus_ochrogaster AA monodelphis_domestica AA mus_caroli AA mus_musculus AA mus_pahari AA mus_spretus AA mustela_putorius_furo AA myotis_lucifugus AA nannospalax_galili AA nomascus_leucogenys AA notamacropus_eugenii AA ochotona_princeps AA octodon_degus AA ornithorhynchus_anatinus AA oryctolagus_cuniculus AA otolemur_garnettii AA ovis_aries AA pan_paniscus AA pan_troglodytes AA panthera_pardus AA panthera_tigris_altaica AA papio_anubis AA peromyscus_maniculatus_bairdii AA pongo_abelii AA procavia_capensis AA propithecus_coquereli AA pteropus_vampyrus AA rattus_norvegicus AA rhinopithecus_bieti AA rhinopithecus_roxellana AA saimiri_boliviensis_boliviensis AA sarcophilus_harrisii AA sorex_araneus AA sus_scrofa AA tupaia_belangeri AA tursiops_truncatus AA vicugna_pacos AA Printing out site pattern counts 72 1 P ailuropoda_melanoleuca A aotus_nancymaae A bos_taurus A callithrix_jacchus A canis_familiaris A capra_hircus A carlito_syrichta A cavia_aperea A cavia_porcellus A cebus_capucinus A cercocebus_atys A chinchilla_lanigera A chlorocebus_sabaeus A choloepus_hoffmanni A colobus_angolensis_palliatus A cricetulus_griseus_chok1gshd A dasypus_novemcinctus A dipodomys_ordii A echinops_telfairi A equus_caballus A erinaceus_europaeus A felis_catus A fukomys_damarensis A gorilla_gorilla A heterocephalus_glaber_female A homo_sapiens A ictidomys_tridecemlineatus A jaculus_jaculus A loxodonta_africana A macaca_fascicularis A macaca_mulatta A macaca_nemestrina A mandrillus_leucophaeus A mesocricetus_auratus A microcebus_murinus A microtus_ochrogaster A monodelphis_domestica A mus_caroli A mus_musculus A mus_pahari A mus_spretus A mustela_putorius_furo A myotis_lucifugus A nannospalax_galili A nomascus_leucogenys A notamacropus_eugenii A ochotona_princeps A octodon_degus A ornithorhynchus_anatinus A oryctolagus_cuniculus A otolemur_garnettii A ovis_aries A pan_paniscus A pan_troglodytes A panthera_pardus A panthera_tigris_altaica A papio_anubis A peromyscus_maniculatus_bairdii A pongo_abelii A procavia_capensis A propithecus_coquereli A pteropus_vampyrus A rattus_norvegicus A rhinopithecus_bieti A rhinopithecus_roxellana A saimiri_boliviensis_boliviensis A sarcophilus_harrisii A sorex_araneus A sus_scrofa A tupaia_belangeri A tursiops_truncatus A vicugna_pacos A 2 Frequencies.. T C A G ailuropoda_melanoleuca 0.00000 0.00000 1.00000 0.00000 GC = 0.000 aotus_nancymaae 0.00000 0.00000 1.00000 0.00000 GC = 0.000 bos_taurus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 callithrix_jacchus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 canis_familiaris 0.00000 0.00000 1.00000 0.00000 GC = 0.000 capra_hircus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 carlito_syrichta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_aperea 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cavia_porcellus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cebus_capucinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cercocebus_atys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chinchilla_lanigera 0.00000 0.00000 1.00000 0.00000 GC = 0.000 chlorocebus_sabaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 choloepus_hoffmanni 0.00000 0.00000 1.00000 0.00000 GC = 0.000 colobus_angolensis_palliatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 cricetulus_griseus_chok1gshd 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dasypus_novemcinctus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 dipodomys_ordii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 echinops_telfairi 0.00000 0.00000 1.00000 0.00000 GC = 0.000 equus_caballus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 erinaceus_europaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 felis_catus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 fukomys_damarensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 gorilla_gorilla 0.00000 0.00000 1.00000 0.00000 GC = 0.000 heterocephalus_glaber_female 0.00000 0.00000 1.00000 0.00000 GC = 0.000 homo_sapiens 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ictidomys_tridecemlineatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 jaculus_jaculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 loxodonta_africana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_fascicularis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_mulatta 0.00000 0.00000 1.00000 0.00000 GC = 0.000 macaca_nemestrina 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mandrillus_leucophaeus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mesocricetus_auratus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microcebus_murinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 microtus_ochrogaster 0.00000 0.00000 1.00000 0.00000 GC = 0.000 monodelphis_domestica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_caroli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_musculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_pahari 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mus_spretus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 mustela_putorius_furo 0.00000 0.00000 1.00000 0.00000 GC = 0.000 myotis_lucifugus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nannospalax_galili 0.00000 0.00000 1.00000 0.00000 GC = 0.000 nomascus_leucogenys 0.00000 0.00000 1.00000 0.00000 GC = 0.000 notamacropus_eugenii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ochotona_princeps 0.00000 0.00000 1.00000 0.00000 GC = 0.000 octodon_degus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ornithorhynchus_anatinus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 oryctolagus_cuniculus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 otolemur_garnettii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 ovis_aries 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_paniscus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pan_troglodytes 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_pardus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 panthera_tigris_altaica 0.00000 0.00000 1.00000 0.00000 GC = 0.000 papio_anubis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 peromyscus_maniculatus_bairdii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pongo_abelii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 procavia_capensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 propithecus_coquereli 0.00000 0.00000 1.00000 0.00000 GC = 0.000 pteropus_vampyrus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rattus_norvegicus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_bieti 0.00000 0.00000 1.00000 0.00000 GC = 0.000 rhinopithecus_roxellana 0.00000 0.00000 1.00000 0.00000 GC = 0.000 saimiri_boliviensis_boliviensis 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sarcophilus_harrisii 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sorex_araneus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 sus_scrofa 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tupaia_belangeri 0.00000 0.00000 1.00000 0.00000 GC = 0.000 tursiops_truncatus 0.00000 0.00000 1.00000 0.00000 GC = 0.000 vicugna_pacos 0.00000 0.00000 1.00000 0.00000 GC = 0.000 Homogeneity statistic: X2 = 0.00000 G = 0.00000 Average 0.00000 0.00000 1.00000 0.00000 # constant sites: 2 (100.00%) Time used: 0:00 mean of parameters using all iterations 0.57920 0.40338 0.13376 0.07275 0.22093 0.10654 0.06872 0.08679 0.07435 0.21472 0.19161 0.14767 0.16678 0.11401 0.10388 0.08332 0.01756 0.00896 0.06879 0.05634 0.09917 0.08281 0.07510 0.06859 0.03127 0.01917 0.20349 0.19608 0.18016 0.11070 0.16658 0.16226 0.11312 0.06087 0.10267 0.02779 0.08526 0.14960 0.13709 0.11631 0.09701 0.06275 0.01379 0.05749 0.07535 0.06248 0.05468 0.04404 0.19126 0.13249 0.08293 0.18002 0.13115 0.06292 0.05728 0.00900 0.11503 0.08462 0.06265 0.04826 0.03792 0.02488 0.02945 0.01291 0.05571 0.03460 0.09663 0.07636 0.03426 0.02194 0.00239 0.02279 0.02037 0.02888 0.03597 0.05830 0.10553 0.05579 0.04439 Species tree for FigTree. Branch lengths = posterior mean times; 95% CIs = labels (1_ornithorhynchus_anatinus, ((2_monodelphis_domestica, (3_notamacropus_eugenii, 4_sarcophilus_harrisii) 76 ) 75 , (((5_choloepus_hoffmanni, 6_dasypus_novemcinctus) 79 , (7_echinops_telfairi, (8_procavia_capensis, 9_loxodonta_africana) 81 ) 80 ) 78 , (((10_sorex_araneus, 11_erinaceus_europaeus) 84 , ((12_pteropus_vampyrus, 13_myotis_lucifugus) 86 , (((14_felis_catus, (15_panthera_tigris_altaica, 16_panthera_pardus) 90 ) 89 , (17_canis_familiaris, (18_mustela_putorius_furo, 19_ailuropoda_melanoleuca) 92 ) 91 ) 88 , (20_equus_caballus, (21_vicugna_pacos, (22_sus_scrofa, (23_tursiops_truncatus, (24_bos_taurus, (25_ovis_aries, 26_capra_hircus) 98 ) 97 ) 96 ) 95 ) 94 ) 93 ) 87 ) 85 ) 83 , ((27_tupaia_belangeri, ((28_oryctolagus_cuniculus, 29_ochotona_princeps) 102 , (30_ictidomys_tridecemlineatus, (((31_fukomys_damarensis, 32_heterocephalus_glaber_female) 106 , ((33_cavia_porcellus, 34_cavia_aperea) 108 , (35_chinchilla_lanigera, 36_octodon_degus) 109 ) 107 ) 105 , (37_dipodomys_ordii, (38_jaculus_jaculus, (39_nannospalax_galili, (((40_mesocricetus_auratus, 41_cricetulus_griseus_chok1gshd) 115 , (42_peromyscus_maniculatus_bairdii, 43_microtus_ochrogaster) 116 ) 114 , (44_rattus_norvegicus, (45_mus_pahari, (46_mus_caroli, (47_mus_musculus, 48_mus_spretus) 120 ) 119 ) 118 ) 117 ) 113 ) 112 ) 111 ) 110 ) 104 ) 103 ) 101 ) 100 , ((49_otolemur_garnettii, (50_propithecus_coquereli, 51_microcebus_murinus) 123 ) 122 , (52_carlito_syrichta, (((53_aotus_nancymaae, 54_callithrix_jacchus) 127 , (55_saimiri_boliviensis_boliviensis, 56_cebus_capucinus) 128 ) 126 , (((57_chlorocebus_sabaeus, ((58_papio_anubis, (59_cercocebus_atys, 60_mandrillus_leucophaeus) 134 ) 133 , (61_macaca_nemestrina, (62_macaca_mulatta, 63_macaca_fascicularis) 136 ) 135 ) 132 ) 131 , (64_colobus_angolensis_palliatus, (65_rhinopithecus_roxellana, 66_rhinopithecus_bieti) 138 ) 137 ) 130 , (67_nomascus_leucogenys, (68_pongo_abelii, (69_gorilla_gorilla, (70_homo_sapiens, (71_pan_troglodytes, 72_pan_paniscus) 143 ) 142 ) 141 ) 140 ) 139 ) 129 ) 125 ) 124 ) 121 ) 99 ) 82 ) 77 ) 74 ) 73 ; (ornithorhynchus_anatinus: 0.579196, ((monodelphis_domestica: 0.133755, (notamacropus_eugenii: 0.072747, sarcophilus_harrisii: 0.072747): 0.061008): 0.269627, (((choloepus_hoffmanni: 0.068723, dasypus_novemcinctus: 0.068723): 0.037812, (echinops_telfairi: 0.086793, (procavia_capensis: 0.074347, loxodonta_africana: 0.074347): 0.012446): 0.019742): 0.114395, (((sorex_araneus: 0.147665, erinaceus_europaeus: 0.147665): 0.043944, ((pteropus_vampyrus: 0.114007, myotis_lucifugus: 0.114007): 0.052773, (((felis_catus: 0.017558, (panthera_tigris_altaica: 0.008959, panthera_pardus: 0.008959): 0.008599): 0.065765, (canis_familiaris: 0.068795, (mustela_putorius_furo: 0.056345, ailuropoda_melanoleuca: 0.056345): 0.012450): 0.014528): 0.020556, (equus_caballus: 0.099173, (vicugna_pacos: 0.082814, (sus_scrofa: 0.075096, (tursiops_truncatus: 0.068591, (bos_taurus: 0.031266, (ovis_aries: 0.019174, capra_hircus: 0.019174): 0.012092): 0.037325): 0.006505): 0.007718): 0.016359): 0.004706): 0.062901): 0.024829): 0.023108, ((tupaia_belangeri: 0.196077, ((oryctolagus_cuniculus: 0.110696, ochotona_princeps: 0.110696): 0.069462, (ictidomys_tridecemlineatus: 0.166585, (((fukomys_damarensis: 0.060866, heterocephalus_glaber_female: 0.060866): 0.052250, ((cavia_porcellus: 0.027788, cavia_aperea: 0.027788): 0.074885, (chinchilla_lanigera: 0.085260, octodon_degus: 0.085260): 0.017413): 0.010443): 0.049140, (dipodomys_ordii: 0.149604, (jaculus_jaculus: 0.137092, (nannospalax_galili: 0.116315, (((mesocricetus_auratus: 0.013790, cricetulus_griseus_chok1gshd: 0.013790): 0.048955, (peromyscus_maniculatus_bairdii: 0.057495, microtus_ochrogaster: 0.057495): 0.005250): 0.034262, (rattus_norvegicus: 0.075353, (mus_pahari: 0.062481, (mus_caroli: 0.054678, (mus_musculus: 0.044035, mus_spretus: 0.044035): 0.010643): 0.007803): 0.012872): 0.021654): 0.019308): 0.020777): 0.012513): 0.012652): 0.004329): 0.013573): 0.015919): 0.007415, ((otolemur_garnettii: 0.132494, (propithecus_coquereli: 0.082930, microcebus_murinus: 0.082930): 0.049564): 0.058767, (carlito_syrichta: 0.180025, (((aotus_nancymaae: 0.057278, callithrix_jacchus: 0.057278): 0.005646, (saimiri_boliviensis_boliviensis: 0.008999, cebus_capucinus: 0.008999): 0.053925): 0.068224, (((chlorocebus_sabaeus: 0.062645, ((papio_anubis: 0.037925, (cercocebus_atys: 0.024880, mandrillus_leucophaeus: 0.024880): 0.013045): 0.010331, (macaca_nemestrina: 0.029447, (macaca_mulatta: 0.012908, macaca_fascicularis: 0.012908): 0.016539): 0.018809): 0.014390): 0.021972, (colobus_angolensis_palliatus: 0.055706, (rhinopithecus_roxellana: 0.034604, rhinopithecus_bieti: 0.034604): 0.021102): 0.028911): 0.030414, (nomascus_leucogenys: 0.096631, (pongo_abelii: 0.076358, (gorilla_gorilla: 0.034263, (homo_sapiens: 0.021937, (pan_troglodytes: 0.002387, pan_paniscus: 0.002387): 0.019550): 0.012327): 0.042095): 0.020273): 0.018400): 0.016117): 0.048876): 0.011237): 0.012231): 0.011225): 0.006213): 0.182453): 0.175813); (ornithorhynchus_anatinus: 0.579196, ((monodelphis_domestica: 0.133755, (notamacropus_eugenii: 0.072747, sarcophilus_harrisii: 0.072747) [&95%HPD={0.0324143, 0.134138}]: 0.061008) [&95%HPD={0.084743, 0.220612}]: 0.269627, (((choloepus_hoffmanni: 0.068723, dasypus_novemcinctus: 0.068723) [&95%HPD={0.03213, 0.142022}]: 0.037812, (echinops_telfairi: 0.086793, (procavia_capensis: 0.074347, loxodonta_africana: 0.074347) [&95%HPD={0.0347134, 0.134671}]: 0.012446) [&95%HPD={0.0389071, 0.168851}]: 0.019742) [&95%HPD={0.0499866, 0.203196}]: 0.114395, (((sorex_araneus: 0.147665, erinaceus_europaeus: 0.147665) [&95%HPD={0.0727208, 0.260658}]: 0.043944, ((pteropus_vampyrus: 0.114007, myotis_lucifugus: 0.114007) [&95%HPD={0.0627147, 0.191125}]: 0.052773, (((felis_catus: 0.017558, (panthera_tigris_altaica: 0.008959, panthera_pardus: 0.008959) [&95%HPD={0.0069743, 0.0119672}]: 0.008599) [&95%HPD={0.0132174, 0.027628}]: 0.065765, (canis_familiaris: 0.068795, (mustela_putorius_furo: 0.056345, ailuropoda_melanoleuca: 0.056345) [&95%HPD={0.0168288, 0.111465}]: 0.012450) [&95%HPD={0.0255948, 0.129362}]: 0.014528) [&95%HPD={0.0435878, 0.14052}]: 0.020556, (equus_caballus: 0.099173, (vicugna_pacos: 0.082814, (sus_scrofa: 0.075096, (tursiops_truncatus: 0.068591, (bos_taurus: 0.031266, (ovis_aries: 0.019174, capra_hircus: 0.019174) [&95%HPD={0.0153982, 0.0244562}]: 0.012092) [&95%HPD={0.0246398, 0.0451613}]: 0.037325) [&95%HPD={0.0402116, 0.113204}]: 0.006505) [&95%HPD={0.0447281, 0.12173}]: 0.007718) [&95%HPD={0.0497529, 0.139368}]: 0.016359) [&95%HPD={0.0543071, 0.17222}]: 0.004706) [&95%HPD={0.0558003, 0.176706}]: 0.062901) [&95%HPD={0.0713442, 0.299878}]: 0.024829) [&95%HPD={0.0928387, 0.332343}]: 0.023108, ((tupaia_belangeri: 0.196077, ((oryctolagus_cuniculus: 0.110696, ochotona_princeps: 0.110696) [&95%HPD={0.0695282, 0.199029}]: 0.069462, (ictidomys_tridecemlineatus: 0.166585, (((fukomys_damarensis: 0.060866, heterocephalus_glaber_female: 0.060866) [&95%HPD={0.032005, 0.115032}]: 0.052250, ((cavia_porcellus: 0.027788, cavia_aperea: 0.027788) [&95%HPD={0.0196401, 0.0397201}]: 0.074885, (chinchilla_lanigera: 0.085260, octodon_degus: 0.085260) [&95%HPD={0.0369999, 0.138346}]: 0.017413) [&95%HPD={0.0541241, 0.166654}]: 0.010443) [&95%HPD={0.0690405, 0.189973}]: 0.049140, (dipodomys_ordii: 0.149604, (jaculus_jaculus: 0.137092, (nannospalax_galili: 0.116315, (((mesocricetus_auratus: 0.013790, cricetulus_griseus_chok1gshd: 0.013790) [&95%HPD={0.0076232, 0.0237951}]: 0.048955, (peromyscus_maniculatus_bairdii: 0.057495, microtus_ochrogaster: 0.057495) [&95%HPD={0.0269494, 0.098839}]: 0.005250) [&95%HPD={0.0322476, 0.109405}]: 0.034262, (rattus_norvegicus: 0.075353, (mus_pahari: 0.062481, (mus_caroli: 0.054678, (mus_musculus: 0.044035, mus_spretus: 0.044035) [&95%HPD={0.0253696, 0.0698771}]: 0.010643) [&95%HPD={0.0359631, 0.0823482}]: 0.007803) [&95%HPD={0.0397588, 0.0969531}]: 0.012872) [&95%HPD={0.0479153, 0.117297}]: 0.021654) [&95%HPD={0.0564245, 0.159546}]: 0.019308) [&95%HPD={0.062141, 0.201713}]: 0.020777) [&95%HPD={0.0675457, 0.244365}]: 0.012513) [&95%HPD={0.0734354, 0.267647}]: 0.012652) [&95%HPD={0.082339, 0.296334}]: 0.004329) [&95%HPD={0.0828921, 0.304206}]: 0.013573) [&95%HPD={0.086247, 0.327479}]: 0.015919) [&95%HPD={0.0951679, 0.341091}]: 0.007415, ((otolemur_garnettii: 0.132494, (propithecus_coquereli: 0.082930, microcebus_murinus: 0.082930) [&95%HPD={0.0582219, 0.136505}]: 0.049564) [&95%HPD={0.0723579, 0.227468}]: 0.058767, (carlito_syrichta: 0.180025, (((aotus_nancymaae: 0.057278, callithrix_jacchus: 0.057278) [&95%HPD={0.0327784, 0.0892919}]: 0.005646, (saimiri_boliviensis_boliviensis: 0.008999, cebus_capucinus: 0.008999) [&95%HPD={0.0012861, 0.0331498}]: 0.053925) [&95%HPD={0.0462016, 0.095612}]: 0.068224, (((chlorocebus_sabaeus: 0.062645, ((papio_anubis: 0.037925, (cercocebus_atys: 0.024880, mandrillus_leucophaeus: 0.024880) [&95%HPD={0.015012, 0.0405444}]: 0.013045) [&95%HPD={0.028118, 0.0574649}]: 0.010331, (macaca_nemestrina: 0.029447, (macaca_mulatta: 0.012908, macaca_fascicularis: 0.012908) [&95%HPD={0.0099427, 0.0175267}]: 0.016539) [&95%HPD={0.0265825, 0.0323271}]: 0.018809) [&95%HPD={0.0367819, 0.0691648}]: 0.014390) [&95%HPD={0.0431581, 0.093477}]: 0.021972, (colobus_angolensis_palliatus: 0.055706, (rhinopithecus_roxellana: 0.034604, rhinopithecus_bieti: 0.034604) [&95%HPD={0.0228314, 0.0523927}]: 0.021102) [&95%HPD={0.0392124, 0.0901904}]: 0.028911) [&95%HPD={0.0604358, 0.127401}]: 0.030414, (nomascus_leucogenys: 0.096631, (pongo_abelii: 0.076358, (gorilla_gorilla: 0.034263, (homo_sapiens: 0.021937, (pan_troglodytes: 0.002387, pan_paniscus: 0.002387) [&95%HPD={0.0012513, 0.0044412}]: 0.019550) [&95%HPD={0.0131455, 0.0369927}]: 0.012327) [&95%HPD={0.0170593, 0.0604714}]: 0.042095) [&95%HPD={0.0297083, 0.126005}]: 0.020273) [&95%HPD={0.0623458, 0.148122}]: 0.018400) [&95%HPD={0.069225, 0.183313}]: 0.016117) [&95%HPD={0.0700577, 0.211615}]: 0.048876) [&95%HPD={0.0801503, 0.313131}]: 0.011237) [&95%HPD={0.0835965, 0.338604}]: 0.012231) [&95%HPD={0.098255, 0.357821}]: 0.011225) [&95%HPD={0.106996, 0.390736}]: 0.006213) [&95%HPD={0.108283, 0.404969}]: 0.182453) [&95%HPD={0.127906, 0.868669}]: 0.175813) [&95%HPD={0.133747, 1.39358}]; Posterior mean (95% Equal-tail CI) (95% HPD CI) HPD-CI-width t_n73 0.5774 ( 0.1337, 1.3936) ( 0.1337, 1.3936) 1.2598 (Jnode 142) t_n74 0.4032 ( 0.1279, 0.8687) ( 0.1279, 0.8687) 0.7408 (Jnode 141) t_n75 0.1337 ( 0.0847, 0.2206) ( 0.0847, 0.2206) 0.1359 (Jnode 140) t_n76 0.0724 ( 0.0324, 0.1341) ( 0.0324, 0.1341) 0.1017 (Jnode 139) t_n77 0.2202 ( 0.1083, 0.4050) ( 0.1083, 0.4050) 0.2967 (Jnode 138) t_n78 0.1062 ( 0.0500, 0.2032) ( 0.0500, 0.2032) 0.1532 (Jnode 137) t_n79 0.0687 ( 0.0321, 0.1420) ( 0.0321, 0.1420) 0.1099 (Jnode 136) t_n80 0.0863 ( 0.0389, 0.1689) ( 0.0389, 0.1689) 0.1299 (Jnode 135) t_n81 0.0741 ( 0.0347, 0.1347) ( 0.0347, 0.1347) 0.1000 (Jnode 134) t_n82 0.2140 ( 0.1070, 0.3907) ( 0.1070, 0.3907) 0.2837 (Jnode 133) t_n83 0.1905 ( 0.0928, 0.3323) ( 0.0928, 0.3323) 0.2395 (Jnode 132) t_n84 0.1469 ( 0.0727, 0.2607) ( 0.0727, 0.2607) 0.1879 (Jnode 131) t_n85 0.1662 ( 0.0713, 0.2999) ( 0.0713, 0.2999) 0.2285 (Jnode 130) t_n86 0.1136 ( 0.0627, 0.1911) ( 0.0627, 0.1911) 0.1284 (Jnode 129) t_n87 0.1036 ( 0.0558, 0.1767) ( 0.0558, 0.1767) 0.1209 (Jnode 128) t_n88 0.0832 ( 0.0436, 0.1405) ( 0.0436, 0.1405) 0.0969 (Jnode 127) t_n89 0.0177 ( 0.0132, 0.0276) ( 0.0132, 0.0276) 0.0144 (Jnode 126) t_n90 0.0091 ( 0.0070, 0.0120) ( 0.0070, 0.0120) 0.0050 (Jnode 125) t_n91 0.0680 ( 0.0256, 0.1294) ( 0.0256, 0.1294) 0.1038 (Jnode 124) t_n92 0.0560 ( 0.0168, 0.1115) ( 0.0168, 0.1115) 0.0946 (Jnode 123) t_n93 0.0989 ( 0.0543, 0.1722) ( 0.0543, 0.1722) 0.1179 (Jnode 122) t_n94 0.0826 ( 0.0498, 0.1394) ( 0.0498, 0.1394) 0.0896 (Jnode 121) t_n95 0.0749 ( 0.0447, 0.1217) ( 0.0447, 0.1217) 0.0770 (Jnode 120) t_n96 0.0685 ( 0.0402, 0.1132) ( 0.0402, 0.1132) 0.0730 (Jnode 119) t_n97 0.0314 ( 0.0246, 0.0452) ( 0.0246, 0.0452) 0.0205 (Jnode 118) t_n98 0.0194 ( 0.0154, 0.0245) ( 0.0154, 0.0245) 0.0091 (Jnode 117) t_n99 0.2022 ( 0.0983, 0.3578) ( 0.0983, 0.3578) 0.2596 (Jnode 116) t_n100 0.1957 ( 0.0952, 0.3411) ( 0.0952, 0.3411) 0.2459 (Jnode 115) t_n101 0.1796 ( 0.0862, 0.3275) ( 0.0862, 0.3275) 0.2412 (Jnode 114) t_n102 0.1112 ( 0.0695, 0.1990) ( 0.0695, 0.1990) 0.1295 (Jnode 113) t_n103 0.1659 ( 0.0829, 0.3042) ( 0.0829, 0.3042) 0.2213 (Jnode 112) t_n104 0.1617 ( 0.0823, 0.2963) ( 0.0823, 0.2963) 0.2140 (Jnode 111) t_n105 0.1132 ( 0.0690, 0.1900) ( 0.0690, 0.1900) 0.1209 (Jnode 110) t_n106 0.0608 ( 0.0320, 0.1150) ( 0.0320, 0.1150) 0.0830 (Jnode 109) t_n107 0.1023 ( 0.0541, 0.1667) ( 0.0541, 0.1667) 0.1125 (Jnode 108) t_n108 0.0278 ( 0.0196, 0.0397) ( 0.0196, 0.0397) 0.0201 (Jnode 107) t_n109 0.0845 ( 0.0370, 0.1383) ( 0.0370, 0.1383) 0.1013 (Jnode 106) t_n110 0.1493 ( 0.0734, 0.2676) ( 0.0734, 0.2676) 0.1942 (Jnode 105) t_n111 0.1363 ( 0.0675, 0.2444) ( 0.0675, 0.2444) 0.1768 (Jnode 104) t_n112 0.1160 ( 0.0621, 0.2017) ( 0.0621, 0.2017) 0.1396 (Jnode 103) t_n113 0.0968 ( 0.0564, 0.1595) ( 0.0564, 0.1595) 0.1031 (Jnode 102) t_n114 0.0625 ( 0.0322, 0.1094) ( 0.0322, 0.1094) 0.0772 (Jnode 101) t_n115 0.0138 ( 0.0076, 0.0238) ( 0.0076, 0.0238) 0.0162 (Jnode 100) t_n116 0.0572 ( 0.0269, 0.0988) ( 0.0269, 0.0988) 0.0719 (Jnode 99) t_n117 0.0753 ( 0.0479, 0.1173) ( 0.0479, 0.1173) 0.0694 (Jnode 98) t_n118 0.0624 ( 0.0398, 0.0970) ( 0.0398, 0.0970) 0.0572 (Jnode 97) t_n119 0.0546 ( 0.0360, 0.0823) ( 0.0360, 0.0823) 0.0464 (Jnode 96) t_n120 0.0439 ( 0.0254, 0.0699) ( 0.0254, 0.0699) 0.0445 (Jnode 95) t_n121 0.1901 ( 0.0836, 0.3386) ( 0.0836, 0.3386) 0.2550 (Jnode 94) t_n122 0.1321 ( 0.0724, 0.2275) ( 0.0724, 0.2275) 0.1551 (Jnode 93) t_n123 0.0833 ( 0.0582, 0.1365) ( 0.0582, 0.1365) 0.0783 (Jnode 92) t_n124 0.1789 ( 0.0802, 0.3131) ( 0.0802, 0.3131) 0.2330 (Jnode 91) t_n125 0.1307 ( 0.0701, 0.2116) ( 0.0701, 0.2116) 0.1416 (Jnode 90) t_n126 0.0631 ( 0.0462, 0.0956) ( 0.0462, 0.0956) 0.0494 (Jnode 89) t_n127 0.0571 ( 0.0328, 0.0893) ( 0.0328, 0.0893) 0.0565 (Jnode 88) t_n128 0.0091 ( 0.0013, 0.0331) ( 0.0013, 0.0331) 0.0319 (Jnode 87) t_n129 0.1147 ( 0.0692, 0.1833) ( 0.0692, 0.1833) 0.1141 (Jnode 86) t_n130 0.0847 ( 0.0604, 0.1274) ( 0.0604, 0.1274) 0.0670 (Jnode 85) t_n131 0.0627 ( 0.0432, 0.0935) ( 0.0432, 0.0935) 0.0503 (Jnode 84) t_n132 0.0483 ( 0.0368, 0.0692) ( 0.0368, 0.0692) 0.0324 (Jnode 83) t_n133 0.0381 ( 0.0281, 0.0575) ( 0.0281, 0.0575) 0.0293 (Jnode 82) t_n134 0.0248 ( 0.0150, 0.0405) ( 0.0150, 0.0405) 0.0255 (Jnode 81) t_n135 0.0297 ( 0.0266, 0.0323) ( 0.0266, 0.0323) 0.0057 (Jnode 80) t_n136 0.0130 ( 0.0099, 0.0175) ( 0.0099, 0.0175) 0.0076 (Jnode 79) t_n137 0.0560 ( 0.0392, 0.0902) ( 0.0392, 0.0902) 0.0510 (Jnode 78) t_n138 0.0346 ( 0.0228, 0.0524) ( 0.0228, 0.0524) 0.0296 (Jnode 77) t_n139 0.0965 ( 0.0623, 0.1481) ( 0.0623, 0.1481) 0.0858 (Jnode 76) t_n140 0.0756 ( 0.0297, 0.1260) ( 0.0297, 0.1260) 0.0963 (Jnode 75) t_n141 0.0342 ( 0.0171, 0.0605) ( 0.0171, 0.0605) 0.0434 (Jnode 74) t_n142 0.0219 ( 0.0131, 0.0370) ( 0.0131, 0.0370) 0.0238 (Jnode 73) t_n143 0.0024 ( 0.0013, 0.0044) ( 0.0013, 0.0044) 0.0032 (Jnode 72) mu1 0.0230 ( 0.0164, 0.0349) ( 0.0164, 0.0349) 0.0184 mu2 0.0211 ( 0.0118, 0.0465) ( 0.0118, 0.0465) 0.0348 mu3 0.0296 ( 0.0159, 0.0561) ( 0.0159, 0.0561) 0.0402 mu4 0.0367 ( 0.0168, 0.0702) ( 0.0168, 0.0702) 0.0534 sigma2_1 0.0583 ( 0.0575, 0.0592) ( 0.0575, 0.0592) 0.0017 sigma2_2 0.1050 ( 0.0716, 0.1472) ( 0.0716, 0.1472) 0.0756 sigma2_3 0.0556 ( 0.0484, 0.0642) ( 0.0484, 0.0642) 0.0158 sigma2_4 0.0442 ( 0.0354, 0.0553) ( 0.0354, 0.0553) 0.0199 lnL -11558717.8364 (-15236307.3970, -8395298.6410) (-15236307.3970, -8395298.6410) 6841008.7560